Mutation

List of causal flows influenced by the mutation.

Causal Flows are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation may causally activate or deactivate a downstream regulator which then might up- down-regulates a regulon that contains genes with similar expression profiles and binding sites.

Causal Mechanistic Flows for Mutation MYO10

RegulatorRoleRegulonCox Hazard Ratio (Regulon)Transcriptional Programs
DDIT3down-regulatesR-486-0.0796563Pr-2
FOXO1down-regulatesR-14000.106473Pr-124
TCF7L1down-regulatesR-3174-0.135953Pr-99
VBP1up-regulatesR-2104-0.154186Pr-2
RFX3down-regulatesR-16590.15727Pr-14
E4F1down-regulatesR-3147-0.190868Pr-0
ATF4down-regulatesR-930.200122Pr-127
HSF2down-regulatesR-3159-0.213586Pr-85
FOXK1down-regulatesR-1207-0.237776Pr-5
CEBPGdown-regulatesR-436-0.258645Pr-2
FOXJ3down-regulatesR-2876-0.290335Pr-3
ATF3down-regulatesR-2409-0.31315Pr-0
FOXK1down-regulatesR-1191-0.320198Pr-3
TFEBdown-regulatesR-885-0.336909Pr-0
FOXK1down-regulatesR-1192-0.353736Pr-0
TRAF4down-regulatesR-3043-0.355413Pr-4
MEF2Adown-regulatesR-1869-0.397022Pr-2
MLXup-regulatesR-3197-0.407624Pr-0
NFKB1down-regulatesR-1572-0.445091Pr-0
ELF2down-regulatesR-9690.451308Pr-13
FOXK1down-regulatesR-1212-0.459405Pr-99
RFX3down-regulatesR-1660-0.495816Pr-2
MEF2Adown-regulatesR-1866-0.518528Pr-3
CEBPGdown-regulatesR-440-0.532761Pr-0
FOXO1down-regulatesR-14110.58467Pr-60
POU2F1down-regulatesR-71-0.58757Pr-3
CEBPGdown-regulatesR-4490.634521Pr-8
HSF2down-regulatesR-31670.645152Pr-3
POU2F1down-regulatesR-720.691442Pr-124
CREB5down-regulatesR-772-0.748892Pr-0
RARBup-regulatesR-1107-0.777096Pr-9
TRAF4down-regulatesR-3033-0.781484Pr-0
VBP1up-regulatesR-21000.788348Pr-0
HSF1down-regulatesR-51-0.803656Pr-19
FOXO1down-regulatesR-1394-0.807027Pr-0
ELF2down-regulatesR-9820.82189Pr-21
FOXK1down-regulatesR-1188-0.824193Pr-0
FOXJ3down-regulatesR-2886-0.842981Pr-117
RARAdown-regulatesR-159-0.860941Pr-9
HSF1down-regulatesR-52-0.875962Pr-9
ZBTB16down-regulatesR-577-0.900835Pr-0
ZBTB16down-regulatesR-585-0.901934Pr-0
GABPB1down-regulatesR-1953-0.958675Pr-9
NFKB1down-regulatesR-1578-0.969867Pr-65
ZSCAN16up-regulatesR-630-0.981764Pr-117
ENSG00000168269down-regulatesR-1560-0.982515Pr-0
FOXJ3down-regulatesR-2870-0.999227Pr-0
POU2F1down-regulatesR-66-1.00411Pr-0
MAFKdown-regulatesR-28001.04701Pr-13
TRAF4down-regulatesR-30341.06768Pr-124
EGR1up-regulatesR-29051.07137Pr-0
CEBPGdown-regulatesR-433-1.08132Pr-0
MAFKdown-regulatesR-2798-1.12983Pr-0
FOXJ3down-regulatesR-2871-1.14551Pr-58
ZBTB16down-regulatesR-587-1.14633Pr-99
RFX3down-regulatesR-1673-1.17273Pr-10
BACH1down-regulatesR-4731.2099Pr-13
ERFdown-regulatesR-333-1.22378Pr-3
MEF2Adown-regulatesR-1878-1.24921Pr-9
TFEBdown-regulatesR-881-1.26565Pr-0
MAFKdown-regulatesR-2806-1.27994Pr-9
ENSG00000168269down-regulatesR-15641.28019Pr-59
IRF4up-regulatesR-492-1.32725Pr-99
CEBPGdown-regulatesR-4381.33942Pr-13
TCF7L1down-regulatesR-31711.37728Pr-13
RARAdown-regulatesR-1631.38439Pr-134

Genes (104)

MCTP1, RUVBL1, AMIGO3, HSD11B2, RHOG, FLII, TRIML2, RCC2, RAB39A, SEPHS2, ZNF467, ACBD4, SGSH, SHMT2, TRAPPC6B, C16orf72, EWSR1, SELENOF, CSF1, COPB2, ZFP90, TCN2, TARSL2, LMLN, ZBTB3, ZNF829, LAMP1, POLR3C, SESTD1, DCC, PLEKHG7, DPYD, IDO2, ZNF548, NHLRC3, MSANTD1, ARID2, KIAA0408, ZFP92, PAX5, SRGAP3, GDAP2, PDLIM7, HIST1H4C, ZNF785, ZNF786, KLHDC1, ZNF181, MYO1C, ADH5, SIRPA, HIBCH, QRICH1, ASNA1, SPRED2, HLA-DRB5, NCOA6, IPO9, LRIG2, FOXJ3, INPP5F, SELENOT, SPOUT1, PCMTD2, ZNF805, ASPDH, AKT1S1, ZBTB10, CFI, VGLL3, SCAF8, LAT, REPIN1, FBXO16, HAUS3, PPME1, DDX3X, NPEPL1, PPP3R1, C19orf73, TIAF1, PLCXD2, PISD, ARFGAP3, EIF4EBP3, TICAM2, TTC4, PCDHGA12, KIAA1147, THTPA, ZNF559-ZNF177, VBP1, PITX1, HOXD1

Regulons (119)

R-396, R-2169, R-1655, R-642, R-2117, R-1267, R-2764, R-2601, R-1748, R-1705, R-2634, R-172, R-2508, R-1102, R-1707, R-1656, R-1642, R-109, R-1270, R-1933, R-207, R-454, R-1100, R-2607, R-1875, R-57, R-797, R-108, R-1730, R-1741, R-580, R-2659, R-2763, R-944, R-2160, R-100, R-2180, R-2616, R-1769, R-2996, R-1082, R-2500, R-82, R-1310, R-1008, R-1099, R-2435, R-1641, R-380, R-2224, R-2596, R-1643, R-1158, R-1646, R-205, R-899, R-1077, R-516, R-1765, R-2334, R-1066, R-163, R-1376, R-671, R-1281, R-2502, R-2810, R-1582, R-2082, R-3166, R-1004, R-2888, R-822, R-1737, R-1535, R-2748, R-2332, R-2674, R-2614, R-2682, R-1276, R-1639, R-517, R-1732, R-1011, R-1466, R-289, R-2827, R-675, R-549, R-198, R-2841, R-2825, R-2598, R-1307, R-2902, R-515, R-1676, R-103, R-2742, R-1758, R-2229, R-1652, R-1715, R-1058, R-1644, R-1018, R-1653, R-1416, R-2828, R-2670, R-1528, R-446, R-2687, R-520, R-1108, R-1970, R-2513, R-2272

MEF2Adown-regulatesR-1888-1.38486Pr-22
NFKB1down-regulatesR-1583-1.38564Pr-9
BACH1down-regulatesR-472-1.40118Pr-138
FOXO1down-regulatesR-1408-1.42694Pr-9
NFKB1down-regulatesR-15821.44696Pr-134

Genes (104)

MCTP1, RUVBL1, AMIGO3, HSD11B2, RHOG, FLII, TRIML2, RCC2, RAB39A, SEPHS2, ZNF467, ACBD4, SGSH, SHMT2, TRAPPC6B, C16orf72, EWSR1, SELENOF, CSF1, COPB2, ZFP90, TCN2, TARSL2, LMLN, ZBTB3, ZNF829, LAMP1, POLR3C, SESTD1, DCC, PLEKHG7, DPYD, IDO2, ZNF548, NHLRC3, MSANTD1, ARID2, KIAA0408, ZFP92, PAX5, SRGAP3, GDAP2, PDLIM7, HIST1H4C, ZNF785, ZNF786, KLHDC1, ZNF181, MYO1C, ADH5, SIRPA, HIBCH, QRICH1, ASNA1, SPRED2, HLA-DRB5, NCOA6, IPO9, LRIG2, FOXJ3, INPP5F, SELENOT, SPOUT1, PCMTD2, ZNF805, ASPDH, AKT1S1, ZBTB10, CFI, VGLL3, SCAF8, LAT, REPIN1, FBXO16, HAUS3, PPME1, DDX3X, NPEPL1, PPP3R1, C19orf73, TIAF1, PLCXD2, PISD, ARFGAP3, EIF4EBP3, TICAM2, TTC4, PCDHGA12, KIAA1147, THTPA, ZNF559-ZNF177, VBP1, PITX1, HOXD1

Regulons (119)

R-396, R-2169, R-1655, R-642, R-2117, R-1267, R-2764, R-2601, R-1748, R-1705, R-2634, R-172, R-2508, R-1102, R-1707, R-1656, R-1642, R-109, R-1270, R-1933, R-207, R-454, R-1100, R-2607, R-1875, R-57, R-797, R-108, R-1730, R-1741, R-580, R-2659, R-2763, R-944, R-2160, R-100, R-2180, R-2616, R-1769, R-2996, R-1082, R-2500, R-82, R-1310, R-1008, R-1099, R-2435, R-1641, R-380, R-2224, R-2596, R-1643, R-1158, R-1646, R-205, R-899, R-1077, R-516, R-1765, R-2334, R-1066, R-163, R-1376, R-671, R-1281, R-2502, R-2810, R-1582, R-2082, R-3166, R-1004, R-2888, R-822, R-1737, R-1535, R-2748, R-2332, R-2674, R-2614, R-2682, R-1276, R-1639, R-517, R-1732, R-1011, R-1466, R-289, R-2827, R-675, R-549, R-198, R-2841, R-2825, R-2598, R-1307, R-2902, R-515, R-1676, R-103, R-2742, R-1758, R-2229, R-1652, R-1715, R-1058, R-1644, R-1018, R-1653, R-1416, R-2828, R-2670, R-1528, R-446, R-2687, R-520, R-1108, R-1970, R-2513, R-2272

ELF2down-regulatesR-977-1.49682Pr-85
FOXJ3down-regulatesR-28881.53881Pr-134

Genes (104)

MCTP1, RUVBL1, AMIGO3, HSD11B2, RHOG, FLII, TRIML2, RCC2, RAB39A, SEPHS2, ZNF467, ACBD4, SGSH, SHMT2, TRAPPC6B, C16orf72, EWSR1, SELENOF, CSF1, COPB2, ZFP90, TCN2, TARSL2, LMLN, ZBTB3, ZNF829, LAMP1, POLR3C, SESTD1, DCC, PLEKHG7, DPYD, IDO2, ZNF548, NHLRC3, MSANTD1, ARID2, KIAA0408, ZFP92, PAX5, SRGAP3, GDAP2, PDLIM7, HIST1H4C, ZNF785, ZNF786, KLHDC1, ZNF181, MYO1C, ADH5, SIRPA, HIBCH, QRICH1, ASNA1, SPRED2, HLA-DRB5, NCOA6, IPO9, LRIG2, FOXJ3, INPP5F, SELENOT, SPOUT1, PCMTD2, ZNF805, ASPDH, AKT1S1, ZBTB10, CFI, VGLL3, SCAF8, LAT, REPIN1, FBXO16, HAUS3, PPME1, DDX3X, NPEPL1, PPP3R1, C19orf73, TIAF1, PLCXD2, PISD, ARFGAP3, EIF4EBP3, TICAM2, TTC4, PCDHGA12, KIAA1147, THTPA, ZNF559-ZNF177, VBP1, PITX1, HOXD1

Regulons (119)

R-396, R-2169, R-1655, R-642, R-2117, R-1267, R-2764, R-2601, R-1748, R-1705, R-2634, R-172, R-2508, R-1102, R-1707, R-1656, R-1642, R-109, R-1270, R-1933, R-207, R-454, R-1100, R-2607, R-1875, R-57, R-797, R-108, R-1730, R-1741, R-580, R-2659, R-2763, R-944, R-2160, R-100, R-2180, R-2616, R-1769, R-2996, R-1082, R-2500, R-82, R-1310, R-1008, R-1099, R-2435, R-1641, R-380, R-2224, R-2596, R-1643, R-1158, R-1646, R-205, R-899, R-1077, R-516, R-1765, R-2334, R-1066, R-163, R-1376, R-671, R-1281, R-2502, R-2810, R-1582, R-2082, R-3166, R-1004, R-2888, R-822, R-1737, R-1535, R-2748, R-2332, R-2674, R-2614, R-2682, R-1276, R-1639, R-517, R-1732, R-1011, R-1466, R-289, R-2827, R-675, R-549, R-198, R-2841, R-2825, R-2598, R-1307, R-2902, R-515, R-1676, R-103, R-2742, R-1758, R-2229, R-1652, R-1715, R-1058, R-1644, R-1018, R-1653, R-1416, R-2828, R-2670, R-1528, R-446, R-2687, R-520, R-1108, R-1970, R-2513, R-2272

RFX3down-regulatesR-16571.68517Pr-60
HBP1down-regulatesR-18271.73978Pr-136
FOXO1down-regulatesR-14091.77972Pr-21
NFKB1down-regulatesR-1588-1.78822Pr-3
ZBTB16down-regulatesR-5861.81277Pr-3
RFX3down-regulatesR-16691.97317Pr-21
CREB5down-regulatesR-773-2.00879Pr-4
NR3C1up-regulatesR-31792.06628Pr-60
NR3C1up-regulatesR-3195-2.141Pr-116

Genes (3)

CLCF1, RDH14

Regulons (3)

R-1217, R-1537, R-3195

RELAdown-regulatesR-1463-2.30399Pr-4
RUNX2down-regulatesR-12832.3191Pr-123
NFKB1down-regulatesR-1573-2.35352Pr-4
NR3C1up-regulatesR-3187-2.36326Pr-85
MAFKdown-regulatesR-2804-2.38089Pr-11
MEF2Adown-regulatesR-18812.39457Pr-21
MAFKdown-regulatesR-2799-2.41258Pr-4
POU2F1down-regulatesR-68-2.42589Pr-4
CEBPGdown-regulatesR-4452.53867Pr-21
HBP1down-regulatesR-18372.57298Pr-21
GABPB1down-regulatesR-19442.5919Pr-55
RUNX2down-regulatesR-12842.62887Pr-108
ATF4down-regulatesR-95-2.89504Pr-10
NR3C1up-regulatesR-3186-2.93135Pr-91
BACH1down-regulatesR-4762.9321Pr-21
NR3C1up-regulatesR-3180-2.95291Pr-94
MAFKdown-regulatesR-2813-3.12874Pr-4
ENSG00000168269down-regulatesR-1565-3.23366Pr-98

Genes (2)

QTRT1

Regulons (3)

R-65, R-1552, R-1565

MEF2Adown-regulatesR-1874-3.26785Pr-135
TEFup-regulatesR-2406-3.30554Pr-135
ZNF219down-regulatesR-22103.3532Pr-8
ZNF219down-regulatesR-22093.35607Pr-108
POU2F1down-regulatesR-884.3225Pr-69

Genes (1)

KLF13

Regulons (9)

R-3040, R-3188, R-1581, R-88, R-1665, R-334, R-703, R-783, R-2719

RFX3down-regulatesR-16654.55866Pr-69

Genes (1)

KLF13

Regulons (9)

R-3040, R-3188, R-1581, R-88, R-1665, R-334, R-703, R-783, R-2719

Mutation Causal Mechanistic Flow Network

Cytoscape network of the causal flows influenced by the mutation.

Influences from mutations (magenta chevrons) to regulators (blue triangles) and then from regulators to the given regulon (red square) are indicated with colored edges. Red-colored edges denote up-regulation or activation while green colored edges represent down-regulation or repression.

Mutation Survival Plots

Kaplan-Meier curves demonstrating the sub-stratification of clinical subtypes based upon the network activity of the most predictive individual or pair of genes as determined by the LASSO predictions