Regulator

Summary of regulator annotations and link-out to annotation databases

Basic gene annotations are collected from Uniprot and displayed with links to original sources. A quick link to explore the genomic context with Uniprot Browser is available.

SMAD4 - SMAD family member 4

Uniprot Browser
Entrez IDEnsEMBL IDPreferred NameUniprot ID
4089 ENSG00000141646 SMAD4 Q13485

List of causal flows containing the regulator.

Causal Flows are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation may causally activate or deactivate a downstream regulator which then might up- down-regulates a regulonthat contains genes with similar expression profiles and binding sites.

Causal Mechanistic Flows for Regulator: SMAD4

MutationRegulatorRoleRegulonCox Hazard RatioTranscriptional Program
AHNAK2SMAD4activatesR-2357-0.642425Pr-60
CMYA5SMAD4activatesR-2357-0.642425Pr-60
DNAH5SMAD4activatesR-2357-0.642425Pr-60
PKHD1L1SMAD4activatesR-2357-0.642425Pr-60
PTPRTSMAD4activatesR-2357-0.642425Pr-60
t(11;14)SMAD4activatesR-2357-0.642425Pr-60
t(11;14)_cytogeneticSMAD4activatesR-2357-0.642425Pr-60
KIAA1109SMAD4activatesR-23560.755167Pr-111
NRASSMAD4activatesR-23560.755167Pr-111
t(11;14)SMAD4activatesR-23560.755167Pr-111
t(11;14)_cytogeneticSMAD4activatesR-23560.755167Pr-111
CMYA5SMAD4activatesR-2353-0.946769Pr-58
COL12A1SMAD4activatesR-2353-0.946769Pr-58
DNAH5SMAD4activatesR-2353-0.946769Pr-58
DSTSMAD4activatesR-2353-0.946769Pr-58
KIAA1109SMAD4activatesR-2353-0.946769Pr-58
LRP2SMAD4activatesR-2353-0.946769Pr-58
PCDH10SMAD4activatesR-2353-0.946769Pr-58
PKHD1L1SMAD4activatesR-2353-0.946769Pr-58
t(11;14)SMAD4activatesR-2353-0.946769Pr-58
ROBO1SMAD4activatesR-2353-0.946769Pr-58
t(11;14)_cytogeneticSMAD4activatesR-2353-0.946769Pr-58
AHNAK2SMAD4repressesR-23581.49431Pr-117
CMYA5SMAD4repressesR-23581.49431Pr-117
DSTSMAD4repressesR-23581.49431Pr-117
KMT2BSMAD4repressesR-23581.49431Pr-117
NRASSMAD4repressesR-23581.49431Pr-117
PKHD1L1SMAD4repressesR-23581.49431Pr-117
t(11;14)SMAD4repressesR-23581.49431Pr-117
t(11;14)_cytogeneticSMAD4repressesR-23581.49431Pr-117
NRASSMAD4activatesR-23591.51133Pr-125
t(11;14)SMAD4activatesR-23591.51133Pr-125
RNASeq_MAFB_CallSMAD4activatesR-23591.51133Pr-125
t(14;16)SMAD4activatesR-23591.51133Pr-125
t(11;14)_cytogeneticSMAD4activatesR-23591.51133Pr-125
NRASSMAD4activatesR-23542.22929Pr-97

Genes (5)

THAP5, HMGB1, KPNA5, ATG9A, GLI4

Regulons (5)

R-2187, R-1977, R-1209, R-3026, R-2354

t(11;14)SMAD4activatesR-23542.22929Pr-97

Genes (5)

THAP5, HMGB1, KPNA5, ATG9A, GLI4

Regulons (5)

R-2187, R-1977, R-1209, R-3026, R-2354

RNASeq_MAFB_CallSMAD4activatesR-23542.22929Pr-97

Genes (5)

THAP5, HMGB1, KPNA5, ATG9A, GLI4

Regulons (5)

R-2187, R-1977, R-1209, R-3026, R-2354

t(14;16)SMAD4activatesR-23542.22929Pr-97

Genes (5)

THAP5, HMGB1, KPNA5, ATG9A, GLI4

Regulons (5)

R-2187, R-1977, R-1209, R-3026, R-2354

AHNAK2SMAD4activatesR-2355-3.44256Pr-86
CMYA5SMAD4activatesR-2355-3.44256Pr-86
DNAH5SMAD4activatesR-2355-3.44256Pr-86
LRP2SMAD4activatesR-2355-3.44256Pr-86
NRASSMAD4activatesR-2355-3.44256Pr-86
PKHD1L1SMAD4activatesR-2355-3.44256Pr-86
t(14;16)SMAD4activatesR-2355-3.44256Pr-86
ZNF208SMAD4activatesR-2355-3.44256Pr-86

Regulator Causal Mechanistic Flow Network

Cytoscape network of the regulator, with upstream mutations and downstream regulons.

Influences from mutations (magenta chevrons) to this regulator (blue triangles) and then from the regulator to the downstream regulons (red square) are indicated with colored edges. Red-colored edges denote up-regulation or activation while green colored edges represent down-regulation or repression.