Mutation

List of causal flows influenced by the mutation.

Causal Flows are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation may causally activate or deactivate a downstream regulator which then might up- down-regulates a regulon that contains genes with similar expression profiles and binding sites.

Causal Mechanistic Flows for Mutation del17p

RegulatorRoleRegulonCox Hazard Ratio (Regulon)Transcriptional Programs
ELF3down-regulatesR-21480.0747421Pr-3
VBP1up-regulatesR-2104-0.154186Pr-2
POU2F1down-regulatesR-77-0.259838Pr-14
FOXJ3down-regulatesR-2876-0.290335Pr-3
HMBOX1down-regulatesR-23820.378178Pr-62
CEBPBdown-regulatesR-17700.400611Pr-99
HOXA5up-regulatesR-22-0.436928Pr-3
E2F2up-regulatesR-2943-0.530398Pr-58
SPDEFdown-regulatesR-1960-0.548684Pr-3
POU2F1down-regulatesR-71-0.58757Pr-3
FOXJ3down-regulatesR-2878-0.651802Pr-14
BORCS8-MEF2Bdown-regulatesR-959-0.721458Pr-58
VBP1up-regulatesR-21000.788348Pr-0
HOXA3up-regulatesR-2210.849107Pr-18
GABPAup-regulatesR-1454-1.00665Pr-135
FOXJ3down-regulatesR-28831.05152Pr-5
POU2F1down-regulatesR-67-1.13734Pr-58
FOXJ3down-regulatesR-2871-1.14551Pr-58
RARAdown-regulatesR-1641.24046Pr-119

Genes (4)

GPBAR1, RHD, GMFB, C5AR1

Regulons (4)

R-832, R-1181, R-58, R-164

GABPAup-regulatesR-14551.3231Pr-135
RARAdown-regulatesR-1481.3622Pr-5
MLXup-regulatesR-31981.41369Pr-5
FOXJ3down-regulatesR-2892-1.46097Pr-10
ZBTB3up-regulatesR-12711.5513Pr-117
ELF3down-regulatesR-2140-1.58836Pr-99
ELF3down-regulatesR-2149-1.67654Pr-10
ZBTB4down-regulatesR-20901.72041Pr-117
NRF1down-regulatesR-27041.94607Pr-117
E4F1down-regulatesR-3148-2.09252Pr-58
VBP1up-regulatesR-21012.14976Pr-83

Genes (1)

APOBEC3D

Regulons (4)

R-2101, R-2954, R-1662, R-2556

RARAdown-regulatesR-1692.42125Pr-138
CEBPBdown-regulatesR-17602.49135Pr-73
NRF1down-regulatesR-27032.85746Pr-72
STAT5Bup-regulatesR-23703.57469Pr-122
POU2F1down-regulatesR-884.3225Pr-69

Genes (1)

KLF13

Regulons (9)

R-3040, R-3188, R-1581, R-88, R-1665, R-334, R-703, R-783, R-2719

NRF1down-regulatesR-27104.52843Pr-72
E2F2up-regulatesR-29428.59906Pr-68
E2F8up-regulatesR-16268.62493Pr-68
E2F1up-regulatesR-21738.76486Pr-68
E2F1up-regulatesR-21728.82921Pr-68
E2F2up-regulatesR-29448.90615Pr-68
E2F8up-regulatesR-16279.26408Pr-68

Mutation Causal Mechanistic Flow Network

Cytoscape network of the causal flows influenced by the mutation.

Influences from mutations (magenta chevrons) to regulators (blue triangles) and then from regulators to the given regulon (red square) are indicated with colored edges. Red-colored edges denote up-regulation or activation while green colored edges represent down-regulation or repression.

Mutation Survival Plots

Kaplan-Meier curves demonstrating the sub-stratification of clinical subtypes based upon the network activity of the most predictive individual or pair of genes as determined by the LASSO predictions

no survival information available