Mutation

List of causal flows influenced by the mutation.

Causal Flows are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation may causally activate or deactivate a downstream regulator which then might up- down-regulates a regulon that contains genes with similar expression profiles and binding sites.

Causal Mechanistic Flows for Mutation CMYA5

RegulatorRoleRegulonCox Hazard Ratio (Regulon)Transcriptional Programs
ELK3down-regulatesR-2846-0.0445985Pr-39
TRAF4down-regulatesR-3037-0.0698997Pr-2
ELF3down-regulatesR-21480.0747421Pr-3
DDIT3down-regulatesR-486-0.0796563Pr-2
ATF3down-regulatesR-2412-0.107523Pr-10
ATF3down-regulatesR-2410-0.14054Pr-3
VBP1up-regulatesR-2104-0.154186Pr-2
RFX3down-regulatesR-16590.15727Pr-14
RREB1down-regulatesR-22990.160797Pr-120
ZSCAN16up-regulatesR-631-0.165596Pr-2
ATF4down-regulatesR-920.179335Pr-5
ATF4down-regulatesR-930.200122Pr-127
THRAdown-regulatesR-620.204827Pr-117
NF1down-regulatesR-127-0.22305Pr-18
YY1down-regulatesR-25270.251774Pr-5
POU2F1down-regulatesR-77-0.259838Pr-14
POU2F1down-regulatesR-78-0.272418Pr-2
FOXJ3down-regulatesR-2876-0.290335Pr-3
SF1down-regulatesR-1907-0.317014Pr-3
ZNF281down-regulatesR-2479-0.333368Pr-2
ATF3down-regulatesR-24110.339529Pr-2
HMGA1up-regulatesR-817-0.342996Pr-58
CREB1down-regulatesR-2720.366974Pr-2
HMBOX1down-regulatesR-23820.378178Pr-62
NF1down-regulatesR-1300.381224Pr-109
CEBPBdown-regulatesR-17700.400611Pr-99
HMGA1up-regulatesR-8320.407077Pr-119

Genes (4)

GPBAR1, RHD, GMFB, C5AR1

Regulons (4)

R-832, R-1181, R-58, R-164

ZBTB3up-regulatesR-1275-0.421961Pr-3
RFX3down-regulatesR-1660-0.495816Pr-2
RFX3down-regulatesR-16770.519248Pr-117
E2F2up-regulatesR-2943-0.530398Pr-58
RREB1down-regulatesR-2285-0.538758Pr-3
HMBOX1down-regulatesR-2379-0.550956Pr-3
ZBTB3up-regulatesR-1272-0.568661Pr-85
NR4A2down-regulatesR-1717-0.584893Pr-2
POU2F1down-regulatesR-71-0.58757Pr-3
FOXJ3down-regulatesR-2881-0.590232Pr-34
RREB1down-regulatesR-2283-0.618728Pr-2
SMAD4down-regulatesR-2357-0.642425Pr-60
EWSR1down-regulatesR-25590.652492Pr-125
ZNF281down-regulatesR-2472-0.661858Pr-0
NFATC1down-regulatesR-2201-0.687031Pr-120
JUNdown-regulatesR-11860.700789Pr-75
RREB1down-regulatesR-2296-0.757232Pr-9
CREB1down-regulatesR-276-0.764227Pr-10
ELF3down-regulatesR-2151-0.794443Pr-22
POU2F1down-regulatesR-890.796686Pr-18
BBXdown-regulatesR-1536-0.809151Pr-10
HOXA3up-regulatesR-2210.849107Pr-18
FOXJ3down-regulatesR-2873-0.871109Pr-2
ZBTB16down-regulatesR-578-0.879917Pr-58
ZBTB3up-regulatesR-1264-0.885093Pr-9
JUNdown-regulatesR-11810.916484Pr-119

Genes (4)

GPBAR1, RHD, GMFB, C5AR1

Regulons (4)

R-832, R-1181, R-58, R-164

SMAD4down-regulatesR-2353-0.946769Pr-58
JUNdown-regulatesR-1184-0.962738Pr-66

Genes (3)

SHISAL2A, USP7, RUNDC1

Regulons (3)

R-2776, R-1184, R-825

NR4A2down-regulatesR-1718-1.0054Pr-9
RFX1down-regulatesR-2572-1.03711Pr-10
FOXJ3down-regulatesR-28831.05152Pr-5
CREB1down-regulatesR-273-1.05492Pr-9
ELK3down-regulatesR-28451.08229Pr-136
HMBOX1down-regulatesR-23851.11927Pr-18
POU2F1down-regulatesR-67-1.13734Pr-58
FOXJ3down-regulatesR-2871-1.14551Pr-58
NFATC1down-regulatesR-2204-1.15799Pr-10
RFX3down-regulatesR-1673-1.17273Pr-10
THRAdown-regulatesR-581.19237Pr-119

Genes (4)

GPBAR1, RHD, GMFB, C5AR1

Regulons (4)

R-832, R-1181, R-58, R-164

RARAdown-regulatesR-1571.1957Pr-117
ZNF219down-regulatesR-2217-1.20137Pr-10
HMGA1up-regulatesR-836-1.21151Pr-3
HMGA1up-regulatesR-827-1.23916Pr-3
RARAdown-regulatesR-1641.24046Pr-119

Genes (4)

GPBAR1, RHD, GMFB, C5AR1

Regulons (4)

R-832, R-1181, R-58, R-164

KLF13up-regulatesR-2041-1.31925Pr-42
GABPAup-regulatesR-14551.3231Pr-135
ZNF219down-regulatesR-22161.32424Pr-79

Genes (3)

CD2AP, NFAM1, UBE2V1

Regulons (3)

R-2216, R-1862, R-2507

ZNF281down-regulatesR-2486-1.32496Pr-2
RARAdown-regulatesR-1481.3622Pr-5
ZNF281down-regulatesR-2480-1.41308Pr-9
MLXup-regulatesR-31981.41369Pr-5
RFX1down-regulatesR-2570-1.43236Pr-9
FOXJ3down-regulatesR-2892-1.46097Pr-10
GABPAup-regulatesR-14521.4809Pr-136
SMAD4down-regulatesR-23581.49431Pr-117
CREB1down-regulatesR-277-1.54447Pr-35
ZBTB3up-regulatesR-12711.5513Pr-117
ELF3down-regulatesR-2140-1.58836Pr-99
RARAdown-regulatesR-1651.59669Pr-18
ZBTB16down-regulatesR-581-1.64909Pr-5
RFX1down-regulatesR-25661.66776Pr-136
ZBTB16down-regulatesR-590-1.67399Pr-5
VBP1up-regulatesR-21021.67538Pr-73
ELF3down-regulatesR-2149-1.67654Pr-10
ZNF281down-regulatesR-2491-1.68427Pr-10
RFX3down-regulatesR-16571.68517Pr-60
ZBTB4down-regulatesR-20901.72041Pr-117
RARAdown-regulatesR-155-1.76335Pr-42
ZBTB16down-regulatesR-5861.81277Pr-3
HLXdown-regulatesR-2765-1.89441Pr-22
RREB1down-regulatesR-2302-1.95334Pr-10
CREB1down-regulatesR-274-1.97415Pr-10
IKZF1down-regulatesR-9941.98155Pr-117
RFX3down-regulatesR-1678-2.04824Pr-22
POU2F1down-regulatesR-872.07888Pr-136
E4F1down-regulatesR-3148-2.09252Pr-58
TRAF4down-regulatesR-3035-2.1684Pr-17
E2F1up-regulatesR-2176-2.17422Pr-61
ELK3down-regulatesR-28472.18224Pr-135
KLF16up-regulatesR-2694-2.18545Pr-118
NF1down-regulatesR-131-2.28098Pr-118
RREB1down-regulatesR-2286-2.31249Pr-17
NR4A2down-regulatesR-1716-2.35911Pr-17
ZBTB16down-regulatesR-588-2.42313Pr-10
RREB1down-regulatesR-2289-2.4348Pr-94
FOXJ3down-regulatesR-2877-2.43517Pr-86
CEBPBdown-regulatesR-17602.49135Pr-73
RREB1down-regulatesR-2297-2.5711Pr-20
RARAdown-regulatesR-151-2.63142Pr-61
HMGA1up-regulatesR-830-2.65695Pr-109
RFX3down-regulatesR-1674-2.69724Pr-19
ZNF281down-regulatesR-2487-2.70466Pr-4
NFATC1down-regulatesR-2202-2.7244Pr-19
ATF4down-regulatesR-95-2.89504Pr-10
JUNdown-regulatesR-1176-2.91332Pr-94
E2F7down-regulatesR-13853.10364Pr-5
RARAdown-regulatesR-153-3.1944Pr-61
ZNF219down-regulatesR-22093.35607Pr-108
ZBTB6up-regulatesR-612-3.42389Pr-61
SMAD4down-regulatesR-2355-3.44256Pr-86
RFX3down-regulatesR-16683.60705Pr-138
EWSR1down-regulatesR-25543.72615Pr-50
BACH1down-regulatesR-470-3.77843Pr-17
ZNF281down-regulatesR-2484-3.91355Pr-20
PAX5down-regulatesR-2375-4.04335Pr-61
HMGA1up-regulatesR-829-4.15117Pr-3
TCF4down-regulatesR-3001-4.24514Pr-110
TCF4down-regulatesR-2997-4.26614Pr-17
POU2F1down-regulatesR-884.3225Pr-69

Genes (1)

KLF13

Regulons (9)

R-3040, R-3188, R-1581, R-88, R-1665, R-334, R-703, R-783, R-2719

RFX3down-regulatesR-16654.55866Pr-69

Genes (1)

KLF13

Regulons (9)

R-3040, R-3188, R-1581, R-88, R-1665, R-334, R-703, R-783, R-2719

POU2F1down-regulatesR-734.62299Pr-70
CEBPBdown-regulatesR-1764-5.38585Pr-110
HMGA1up-regulatesR-8316.73331Pr-72
E2F2up-regulatesR-29428.59906Pr-68
E2F8up-regulatesR-16268.62493Pr-68
E2F1up-regulatesR-21738.76486Pr-68
E2F1up-regulatesR-21728.82921Pr-68
E2F2up-regulatesR-29448.90615Pr-68
E2F8up-regulatesR-16279.26408Pr-68

Mutation Causal Mechanistic Flow Network

Cytoscape network of the causal flows influenced by the mutation.

Influences from mutations (magenta chevrons) to regulators (blue triangles) and then from regulators to the given regulon (red square) are indicated with colored edges. Red-colored edges denote up-regulation or activation while green colored edges represent down-regulation or repression.

Mutation Survival Plots

Kaplan-Meier curves demonstrating the sub-stratification of clinical subtypes based upon the network activity of the most predictive individual or pair of genes as determined by the LASSO predictions